R Packages

• Sig-Bio-Shiny R-📦 + 🕸️-App for doing significant biology on a set of genes.
• Rmplates RMarkdown Templates R-📦
• sahu Compilation of some utility and wraper functions, along with API calls use in daily tasks.
• EcoGEx (R-📦 + 🕸️-App) helps to look dynamics of gene expression over diffrent strains across different geographical locations.

Web Apps

• Utility apps based on OpenCPU
  • Plot 3D PCA
  • Plot Heatmap
• Shiny based
  • EcoGEx
  • CGEPS
    Compare Transcriptome of two developmental stages in Arabidopsis shoot.
  • abstress
    Explore abiotic stress of a gene in plants.

Teaching

• learn-R for Biologists new to programming.

Codingene Projects

• DSL (Domain Specific Language) Basic Templates
  • Snakemake
  • Nextflow
• Docker Containers
  • BioShineR Containerized Bioconductor and Shiny with DockeR

Other projects:

• A transcriptomic study on cold stress in two Indian rice varieties. Abstract: